GTEx MCP Server

get_tissue_specific_genes

Identify genes with specific expression in particular human tissues using GTEx data, helping researchers analyze tissue-specific gene activity patterns.

Instructions

Get genes with tissue-specific expression patterns

Input Schema

Name	Required	Description	Default
`datasetId`	No	GTEx dataset ID (default: gtex_v8)	gtex_v8
`selectionCriteria`	No	Selection criteria for tissue specificity (default: highestInGroup)	highestInGroup
`tissueSiteDetailId`	Yes	Tissue site detail ID (e.g., Muscle_Skeletal, Brain_Cortex)

Input Schema (JSON Schema)

{
  "properties": {
    "datasetId": {
      "default": "gtex_v8",
      "description": "GTEx dataset ID (default: gtex_v8)",
      "type": "string"
    },
    "selectionCriteria": {
      "default": "highestInGroup",
      "description": "Selection criteria for tissue specificity (default: highestInGroup)",
      "enum": [
        "highestInGroup",
        "aboveThreshold"
      ],
      "type": "string"
    },
    "tissueSiteDetailId": {
      "description": "Tissue site detail ID (e.g., Muscle_Skeletal, Brain_Cortex)",
      "type": "string"
    }
  },
  "required": [
    "tissueSiteDetailId"
  ],
  "type": "object"
}

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