filter_genes
Filter genes in single-cell RNA sequencing data by setting thresholds for minimum/maximum cell counts or expression levels to refine analysis inputs.
Instructions
Filter genes based on number of cells or counts
Input Schema
| Name | Required | Description | Default |
|---|---|---|---|
| max_cells | No | Maximum number of cells expressed required for a gene to pass filtering. | |
| max_counts | No | Maximum number of counts required for a gene to pass filtering. | |
| min_cells | No | Minimum number of cells expressed required for a gene to pass filtering. | |
| min_counts | No | Minimum number of counts required for a gene to pass filtering. |
Input Schema (JSON Schema)
{
"description": "Input schema for the filter_genes preprocessing tool.",
"properties": {
"max_cells": {
"anyOf": [
{
"type": "integer"
},
{
"type": "null"
}
],
"default": null,
"description": "Maximum number of cells expressed required for a gene to pass filtering.",
"title": "Max Cells"
},
"max_counts": {
"anyOf": [
{
"type": "integer"
},
{
"type": "null"
}
],
"default": null,
"description": "Maximum number of counts required for a gene to pass filtering.",
"title": "Max Counts"
},
"min_cells": {
"anyOf": [
{
"type": "integer"
},
{
"type": "null"
}
],
"default": null,
"description": "Minimum number of cells expressed required for a gene to pass filtering.",
"title": "Min Cells"
},
"min_counts": {
"anyOf": [
{
"type": "integer"
},
{
"type": "null"
}
],
"default": null,
"description": "Minimum number of counts required for a gene to pass filtering.",
"title": "Min Counts"
}
},
"title": "FilterGenes",
"type": "object"
}